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Massachusetts Institute of Technology (MIT)'s Articles

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Page 1 of 27

Generalizable, fast, and accurate DeepQSPR with fastprop

Authors: Jackson W. Burns and William H. Green

Citation: Journal of Cheminformatics 2025 17:73

Content type: Software Published on: 13 May 2025
SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data

Authors: Diane Zhang, Åsa Segerstolpe, Michal Slyper, Julia Waldman, Evan Murray, Robert Strasser, Jan Watter, Ofir Cohen, Orr Ashenberg, Daniel Abravanel, Judit Jané-Valbuena, Simon Mages, Ana Lako, Karla Helvie, Orit Rozenblatt-Rosen, Scott Rodig…

Citation: Genome Biology 2025 26:112

Content type: Short Report Published on: 2 May 2025
Building health systems capable of leveraging AI: applying Paul Farmer’s 5S framework for equitable global health

Authors: Liam G. McCoy, Azra Bihorac, Leo Anthony Celi, Matthew Elmore, Divya Kewalramani, Teddy Kwaga, Nicole Martinez-Martin, Renata Prôa, Joel Schamroth, Jonathan D. Shaffer, Alaa Youssef and Amelia Fiske

Citation: BMC Global and Public Health 2025 3:39

Content type: Perspective Published on: 2 May 2025
The story of pain in people with dementia: a rationale for digital measures

Authors: Monica Patrascu, Line I. Berge, Ipsit V. Vahia, Brice Marty, Wilco P. Achterberg, Heather Allore, Richard R. Fletcher and Bettina S. Husebo

Citation: BMC Medicine 2025 23:227

Content type: Debate Published on: 17 April 2025
Temporal dynamics and metagenomics of phosphorothioate epigenomes in the human gut microbiome

Authors: Shane R. Byrne, Michael S. DeMott, Yifeng Yuan, Farzan Ghanegolmohammadi, Stefanie Kaiser, James G. Fox, Eric J. Alm and Peter C. Dedon

Citation: Microbiome 2025 13:81

Content type: Research Published on: 24 March 2025
A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

Authors: Yered Pita-Juarez, Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni M. Delorey, Adam L. Essene, Olga R. Brook, Deepti Pant, Disha Skelton-Badlani, Pourya Naderi, Pinzhu Huang, Liuliu Pan, Tyler Hether, Tallulah S. Andrews, Carly G. K. Ziegler…

Citation: Genome Biology 2025 26:56

Content type: Research Published on: 14 March 2025
Genome-wide CRISPR guide RNA design and specificity analysis with GuideScan2

Authors: Henri Schmidt, Minsi Zhang, Dimitar Chakarov, Vineet Bansal, Haralambos Mourelatos, Francisco J. Sánchez-Rivera, Scott W. Lowe, Andrea Ventura, Christina S. Leslie and Yuri Pritykin

Citation: Genome Biology 2025 26:41

Content type: Methodology Published on: 26 February 2025
The Data Artifacts Glossary: a community-based repository for bias on health datasets

Authors: Rodrigo R. Gameiro, Naira Link Woite, Christopher M. Sauer, Sicheng Hao, Chrystinne Oliveira Fernandes, Anna E. Premo, Alice Rangel Teixeira, Isabelle Resli, An-Kwok Ian Wong and Leo Anthony Celi

Citation: Journal of Biomedical Science 2025 32:14

Content type: Research Published on: 4 February 2025
Molecular and cellular characteristics of cerebrovascular cell types and their contribution to neurodegenerative diseases

Authors: Francisco J. Garcia and Myriam Heiman

Citation: Molecular Neurodegeneration 2025 20:13

Content type: Review Published on: 29 January 2025
Author Correction: X-Mapper: fast and accurate sequence alignment via gapped x-mers

Authors: Jeffry M. Gaston, Eric J. Alm and An-Ni Zhang

Citation: Genome Biology 2025 26:16

Content type: Author Correction Published on: 27 January 2025

The original article was published in Genome Biology 2025 26:15
X-Mapper: fast and accurate sequence alignment via gapped x-mers

Authors: Jeffry M. Gaston, Eric J. Alm and An-Ni Zhang

Citation: Genome Biology 2025 26:15

Content type: Research Published on: 22 January 2025

The Author Correction to this article has been published in Genome Biology 2025 26:16
Using magnetic resonance relaxometry to evaluate the safety and quality of induced pluripotent stem cell-derived spinal cord progenitor cells

Authors: Jerome Tan, Jiahui Chen, Daniel Roxby, Wai Hon Chooi, Tan Dai Nguyen, Shi Yan Ng, Jongyoon Han and Sing Yian Chew

Citation: Stem Cell Research & Therapy 2024 15:465

Content type: Research Published on: 5 December 2024
Correction: Metabolic modulation to improve MSC expansion and therapeutic potential for articular cartilage repair

Authors: Ching Ann Tee, Daniel Ninio Roxby, Rashidah Othman, Vinitha Denslin, Kiesar Sideeq Bhat, Zheng Yang, Jongyoon Han, Lisa Tucker-Kellogg and Laurie A. Boyer

Citation: Stem Cell Research & Therapy 2024 15:403

Content type: Correction Published on: 7 November 2024

The original article was published in Stem Cell Research & Therapy 2024 15:308
UROPOT: study protocol for a randomized, double-blind phase I/II trial for metabolism-based potentiation of antimicrobial prophylaxis in the urological tract

Authors: Kevin Stritt, Beat Roth, Audrey Masnada, Felix Hammann, Damien Jacot, Sonia Domingos-Pereira, François Crettenand, Perrine Bohner, Isabelle Sommer, Emilien Bréat, Julien Sauser, Laurent Derré, Manuel Haschke, James J. Collins, John McKinney and Sylvain Meylan

Citation: Trials 2024 25:682

Content type: Study protocol Published on: 15 October 2024
Understanding and training for the impact of large language models and artificial intelligence in healthcare practice: a narrative review

Authors: Liam G. McCoy, Faye Yu Ci Ng, Christopher M. Sauer, Katelyn Edelwina Yap Legaspi, Bhav Jain, Jack Gallifant, Michael McClurkin, Alessandro Hammond, Deirdre Goode, Judy Gichoya and Leo Anthony Celi

Citation: BMC Medical Education 2024 24:1096

Content type: Review Published on: 7 October 2024
Metabolic modulation to improve MSC expansion and therapeutic potential for articular cartilage repair

Authors: Ching Ann Tee, Daniel Ninio Roxby, Rashidah Othman, Vinitha Denslin, Kiesar Sideeq Bhat, Zheng Yang, Jongyoon Han, Lisa Tucker-Kellogg and Laurie A. Boyer

Citation: Stem Cell Research & Therapy 2024 15:308

Content type: Research Published on: 16 September 2024

The Correction to this article has been published in Stem Cell Research & Therapy 2024 15:403
Inter-laboratory comparison of eleven quantitative or digital PCR assays for detection of proviral bovine leukemia virus in blood samples

Authors: Aneta Pluta, Juan Pablo Jaworski, Casey Droscha, Sophie VanderWeele, Tasia M. Taxis, Stephen Valas, Dragan Brnić, Andreja Jungić, María José Ruano, Azucena Sánchez, Kenji Murakami, Kurumi Nakamura, Rodrigo Puentes, MLaureana De Brun, Vanesa Ruiz, Marla Eliana Ladera Gómez…

Citation: BMC Veterinary Research 2024 20:381

Content type: Research Published on: 26 August 2024
CRISPR-Cas9 knockout screen informs efficient reduction of the Komagataella phaffii secretome

Authors: Neil C. Dalvie, Timothy R. Lorgeree, Yuchen Yang, Sergio A. Rodriguez-Aponte, Charles A. Whittaker, Joshua A. Hinckley, John J. Clark, Amanda M. Del Rosario, Kerry R. Love and J. Christopher Love

Citation: Microbial Cell Factories 2024 23:217

Content type: Research Published on: 31 July 2024
Deletion of VPS50 protein in mouse brain impairs synaptic function and behavior

Authors: Constanza Ahumada-Marchant, Carlos Ancatén-Gonzalez, Henny Haensgen, Bastian Brauer, Nicolas Merino-Veliz, Rita Droste, Felipe Arancibia, H. Robert Horvitz, Martha Constantine-Paton, Gloria Arriagada, Andrés E. Chávez and Fernando J. Bustos

Citation: BMC Biology 2024 22:142

Content type: Research article Published on: 26 June 2024
See-Star: a versatile hydrogel-based protocol for clearing large, opaque and calcified marine invertebrates

Authors: D. N. Clarke, L. Formery and C. J. Lowe

Citation: EvoDevo 2024 15:8

Content type: Research Published on: 25 June 2024