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Call for papers - Environmental microbiology

Guest Editors

Synan F AbuQamar, PhD, United Arab Emirates University, UAE
Solange Duhamel, PhD, University of Arizona, USA
Laure Guillou, PhD, CNRS, France
Ning Ling, PhD, Lanzhou University, China

Submission Status: Open   |   Submission Deadline: 25 January 2026

BMC Biology is calling for submissions to our Collection on  Environmental microbiology. This Collection invites researchers to submit their work on environmental microbiology, focusing on the complex interactions between microorganisms and their environments. We welcome studies that explore microbial diversity, ecological functions, and the implications of microbial activity on ecosystem health and sustainability. Contributions that address the role of microbes in biogeochemical cycles, soil ecology, and responses to climate change are particularly encouraged.

New Content ItemThis Collection supports and amplifies research related to SDG 6: Clean water and Sanitation, SDG 13: Climate Action, SDG 14: Life Below Water, and SDG 15: Life on Land.

Meet the Guest Editors

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Synan F AbuQamar, PhD, United Arab Emirates University, UAE

Synan AbuQamar is a Professor of Biology at United Arab Emirates University. He earned his PhD in Botany & Plant Pathology from Purdue University in 2007, followed by postdoctoral training in 2008. His research focuses on molecular genetics in plant immunity, exploring cellular and molecular mechanisms of defense against necrotrophic pathogens in Arabidopsis, tomato, and date palm. His work also extends to biocontrol applications and environmental remediation. Prof AbuQamar has published over 110 peer-reviewed articles and received prestigious awards, including Khalifa International Award for Date Palm and Agricultural Technology, and King Hamad Prize for Agricultural Development in 2023. Website.

Solange Duhamel, PhD, University of Arizona, USA

Dr Solange Duhamel is an Associate Professor in the Department of Molecular and Cellular Biology at the University of Arizona, with a joint appointment in the Department of Planetary Sciences. She also serves as an Adjunct Research Scientist at the Lamont-Doherty Earth Observatory of Columbia University. Dr Duhamel received her BSc in organismal biology and MSc in Biological Oceanography and Marine Environmental Ecology from the University Pierre et Marie Curie, followed by a PhD in Marine Environmental Science from the University of Aix-Marseille, France. As an environmental microbiologist and biogeochemist, her research focuses on understanding the roles of microorganisms in biogeochemical transformations, their environmental adaptations, and stress responses. She investigates how nutrient bioavailability and energy accessibility influence marine microorganisms' functions, diversity, and distribution. Her work extends to studying life's adaptability to extreme environments, with significant implications for astrobiology. Her approach is multidisciplinary and includes laboratory and field based experimental work. Her research has been supported by various grants from organizations such as the US National Science Foundation and the Gordon and Betty Moore Foundation. Website.

Laure Guillou, PhD, CNRS, France

Dr Guillou is Research Director at CNRS and is an oceanographer specializing in marine plankton diversity and the functional role of parasitic organisms in regulating harmful algal blooms. With a focus on estuarine ecosystems, her research spans over a decade and Dr Guillou investigates the complex interactions between plankton and their parasites across various spatial and temporal scales. Using a combination of morphological, genomic, and ecological approaches, she explores the diversity, evolution, and biology of parasitic eukaryotic lineages in marine environments. Her work often involves big data analysis and the enhancement of reference databases in molecular and genomic ecology. Website.

Ning Ling, PhD, Lanzhou University, Nanjing Agricultural University, China

Dr Ning Ling’s research focuses on soil microbial ecology, with particular emphasis on rhizosphere microbial community dynamics and microbial-mediated biogeochemical cycling of carbon, nitrogen, and phosphorus. Specifically, Dr Ling investigates how fertilization practices and climate change influence soil microbiome assembly and functioning, aiming to develop microbiome-based strategies for sustainable soil management. His work particularly elucidates the microbial mechanisms driving nutrient transformation processes in terrestrial ecosystems. Dr Ling obtained a PhD from Nanjing Agricultural University and currently serves as a Full Professor at the Center of Grassland Microbiome, Lanzhou University. Additionally, he maintains an adjunct professorship in the Department of Plant Nutrition at his alma mater, Nanjing Agricultural University. Website.

About the Collection

BMC Biology is calling for submissions to our Collection on Environmental microbiology. Environmental microbiology is a rapidly evolving field that investigates the interactions between microorganisms and their surrounding environments, including plants, soil, water, and air. This area of research encompasses a diverse range of organisms, from bacteria and protists to extremophiles, and seeks to understand their roles in various ecological processes. By examining microbial communities and their functions, researchers can gain insights into plant-microbe interactions, biogeochemical cycles, nutrient cycling, and ecosystem dynamics. Furthermore, the study of the microbiome in different habitats is crucial for understanding biodiversity, ecosystem resilience, and the potential applications of microbes in environmental remediation. Advancements in molecular biology and bioinformatics have significantly enhanced our understanding of microbial ecology and the intricate relationships that underpin environmental systems. Understanding these interactions is essential for addressing pressing global issues such as climate change, pollution, and ecosystem degradation to develop sustainable strategies for environmental conservation and restoration.

Potential topics include but are not limited to:

  • Plant-associated microbes in sustainable agriculture
  • Microbiomes and symbioses in aquatic ecosystems
  • Microbial contributions to biogeochemical cycles
  • Community structure and dynamics in soil, water, air, and extreme environments
  • Extremophiles and their ecological significance
  • Pathogen Ecology
  • Host-Microbe Environmental Interactions
  • Effects of climate change and environmental stressors on microbial communities
  • Methodological Advances in environmental microbiology


This Collection supports and amplifies research related to SDG 6: Clean water and Sanitation, SDG 13: Climate Action, SDG 14: Life Below Water, and SDG 15: Life on Land.

All manuscripts submitted to this journal, including those submitted to collections and special issues, are assessed in line with our editorial policies and the journal’s peer review process. Reviewers and editors are required to declare competing interests and can be excluded from the peer review process if a competing interest exists.

Image Credit: Â© TOPIC MAGAZINE / NICOLLE R. FULLER / Science Photo Library

There are currently no articles in this collection.

Submission Guidelines

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This Collection welcomes submission of original Research and Methodology Articles. Should you wish to submit a different article type, please read our submission guidelines to confirm that type is accepted by the journal. Articles for this Collection should be submitted via our submission system, Snapp. During the submission process you will be asked whether you are submitting to a Collection, please select "Environmental microbiology" from the dropdown menu.

All manuscripts submitted to this journal, including those submitted to collections and special issues, are assessed in line with our editorial policies and the journal’s peer review process. Reviewers and editors are required to declare competing interests and can be excluded from the peer review process if a competing interest exists.