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Call for papers - The plant microbiome

Guest Editors

Ayansina Segun Ayangbenro, PhD, North-West University, South Africa
Rungroch Sungthong, PhD, Chulalongkorn University, Thailand

Submission Status: Open   |   Submission Deadline: 29 August 2025

BMC Plant Biology launches the collection, The plant microbiome. This collection aims to cover research on the plant microbiome, focusing on its composition and functions, plant-microbe interactions, and possible implications for agricultural practices. Research only focusing on microorganisms without a clear focus on plants/crops, plant-microbe interactions and/or plant-related agricultural practices will not be considered.

New Content ItemThis Collection supports and amplifies research related to SDG 2: Zero Hunger

Meet the Guest Editors

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Ayansina Segun Ayangbenro, PhD, North-West University, South Africa

Dr Ayangbenro is an environmental microbiologist with a broad interest in plant-microbe interactions, soil microbial ecology, remediation of polluted agricultural soils, as well as the interconnectedness of physical and chemical processes in soils. His research focus is on developing biological solutions to mitigate abiotic stresses, such as drought on crop production.
 

Rungroch Sungthong, PhD, Chulalongkorn University, Thailand

Dr Sungthong earned his PhD in Natural Resources and Environment in 2014 from the University of Seville (Spain). His research spans microbiology, environmental sciences, and plant-microbe interactions. Currently, as a researcher in the Department of Biochemistry and Microbiology at the Faculty of Pharmaceutical Sciences, Chulalongkorn University (Thailand), he investigates the pharmaceutical potential of phytochemicals derived from tropical species. His primary interests lie in utilizing beneficial microbes across diverse biotechnological applications. His ongoing research focuses on the use of omics tools to unravel complex biological processes and phenomena.

About the Collection

Plants host diverse communities of microorganisms, the plant microbiota, which play crucial roles in plant health, growth, nutrient uptake, stress tolerance and disease resistance. These plant-associated microbiomes include bacteria, archaea, fungi, protists and viruses, and inhabit different plant compartments such as the above-ground (phyllosphere), below-ground (rhizosphere and spermosphere) and internal tissues (endosphere).

Recent advances in next-generation sequencing have enabled the high-throughput analysis of the composition, structure and functions of plant microbiomes, improving our understanding of the complex and dynamic relationships between plants and microorganisms. Significant progress has been made in understanding the genetic, physiological and metabolic factors that influence the beneficial traits of plant microbial consortia and the mechanisms underlying plant-microbe interactions. As plants are exposed to a range of abiotic and biotic stress challenges, which are exacerbated by climate change, ongoing research on plant microbiomes has the potential to develop microbial applications and agro-management practices to improve crop productivity and soil health.

In support of United Nation’s Sustainable Development Goals SDG 2 (Zero Hunger), BMC Plant Biology launches the collection, The plant microbiome. This collection aims to cover research on the plant microbiome, focusing on its composition and functions, plant-microbe interactions, and possible implications for agricultural practices. Research only focusing on microorganisms without a clear focus on plants/crops, plant-microbe interactions and/or plant-related agricultural practices will not be considered. We invite researchers and experts in the field to submit research articles that explore, but are not limited to, the following topics:

  • Composition, interactions and dynamics of the plant-associated microbiome
  • Plant microbial colonization and community assembly
  • Functions of plant-associated microbiomes (e.g. impact on plant health, growth promotion, nutrient acquisition, disease resistance, stress tolerance)
  • The plant-microbiome interactions in the rhizosphere, spermosphere, phyllosphere and endosphere: mechanisms, signaling and regulation
  • Rhizobiome interactions and their impact on plant health
  • Impact of abiotic and biotic stress on the plant microbiome
  • Modulation of the plant microbiome to promote plant growth and productivity
  • Impact of microbiomes on phytohormone modulation of plant growth
  • Beneficial bacteria and their role in plant health and disease resilience
  • Strategies for enhancing soil health through plant microbiome management
  • Microbial agro-management practices for sustainable agriculture
  • Evolutionary responses of plant–microbiome interactions
  • The plant microbiome under climate change
     

Image credit: © Teerayut / stock.adobe.com

  1. Plasma-activated water (PAW) is a recently developed cutting-edge technology that is increasingly gaining interest for its applications in medicine, food industry and agriculture. In plant biology, PAW has bee...

    Authors: Filippo Binci, Enrico Cortese, Erfan Nouri, Arianna Capparotto, Giacomo Guarneri, Alessio G. Settimi, Manuele Dabalà, Vanni Antoni, Andrea Squartini, Marco Giovannetti and Lorella Navazio
    Citation: BMC Plant Biology 2025 25:544
  2. Microbe-based biostimulants offer a sustainable and promising alternative to synthetic inputs, potentially reducing or replacing conventional inputs in crop management. Studying the native microbiota, particul...

    Authors: Francesco Maria Fagnano, Valeria Ventorino, Edoardo Pasolli, Ida Romano, Patrizia Ambrosino and Olimpia Pepe
    Citation: BMC Plant Biology 2025 25:427
  3. This study investigated the effects of inoculating Lactobacillus parafarraginis alone or in combination with citric acid on the silage quality, microbial community structure, and metabolic characteristics of hybr...

    Authors: Yijia Liu, Wenqing Ling, Yan Li, Yi Zhou, Jue Li, Siqi Chen, Jing Zhou and Fulin Yang
    Citation: BMC Plant Biology 2025 25:325
  4. Reinwardtia indica, a highly valued ethnomedicinal plant, has been traditionally used to treat various ailments due to its rich phytochemical composition. However, the impact of environmental factors, particularl...

    Authors: Karishma Dhiman, Rajni Dhalaria, Rachna Verma, Dinesh Kumar, Abeer Hashem, Najla A. Alshaikh and Elsayed Fathi Abd-Allah
    Citation: BMC Plant Biology 2025 25:306
  5. Maximizing microbial functions for improving crop performance requires better understanding of the important drivers of plant-associated microbiomes. However, it remains unclear the forces that shapes microbia...

    Authors: Oyeyemi Ajayi and Ramamurthy Mahalingam
    Citation: BMC Plant Biology 2025 25:151

Submission Guidelines

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This Collection welcomes submission of original Research Articles. Should you wish to submit a different article type, please read our submission guidelines to confirm that type is accepted by the journal. Articles for this Collection should be submitted via our submission system, Snapp. During the submission process you will be asked whether you are submitting to a Collection, please select "The plant microbiome" from the dropdown menu.

Articles will undergo the journal’s standard peer-review process and are subject to all of the journal’s standard policies. Articles will be added to the Collection as they are published.

The Editors have no competing interests with the submissions which they handle through the peer review process. The peer review of any submissions for which the Editors have competing interests is handled by another Editorial Board Member who has no competing interests.