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Data Notes

At BMC Research Notes, we recognise that valuable data often go unpublished when instead they could be helping to progress science. This is why we launched Data notes: a short article type allowing researchers to describe their data, sharing them with the research community and receiving credit for all their work - not just a finished article.

We present here all the Data notes published in the journal, a free and open resource for the scientific community. Why not join them and free your data too?

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  1. Classification of textual file formats is a topic of interest in network forensics. There are a few publicly available datasets of files with textual formats. Therewith, there is no public dataset for file fra...

    Authors: Fatemeh Mansouri Hanis and Mehdi Teimouri
    Citation: BMC Research Notes 2019 12:801
    Content type: Data note Published on:

  3. File fragment classification of image file formats is a topic of interest in network forensics. There are a few publicly available datasets of files with image formats. Therewith, there is no public dataset fo...

    Authors: Reyhane Fakouri and Mehdi Teimouri
    Citation: BMC Research Notes 2019 12:774
    Content type: Data note Published on:

  4. The data presented here is part of a study that was aimed at characterizing the molecular mechanisms of polyunsaturated fatty acid metabolism by CYP2J2, the main cytochrome P450 enzyme active in the human card...

    Authors: K. K. Abelak, D. Bishop-Bailey and I. Nobeli
    Citation: BMC Research Notes 2019 12:760
    Content type: Data note Published on:

  5. In frame of a study to characterize the interaction of human macrophage-like cells with pathogenic corynebacteria, Corynebacterium diphtheriae and Corynebacterium ulcerans, live cell imaging experiments were carr...

    Authors: Dulanthi Weerasekera, Jonas Hahn, Martin Herrmann and Andreas Burkovski
    Citation: BMC Research Notes 2019 12:695
    Content type: Data note Published on:

  6. Corynebacterium ulcerans can colonize a wide variety of animals and also humans are infected, typically by zoonotic transmission. Symptoms range from skin ulcers or systemic infections to diphtheria-like illness....

    Authors: Anne Busch, Jens Möller, Andreas Burkovski and Helmut Hotzel
    Citation: BMC Research Notes 2019 12:692
    Content type: Data note Published on:

  7. Like many other proteins, those belonging to the signal transduction cascade initiating sporulation (Spo0 pathway) have conserved protein domains (Capra and Laub in Annu Rev Microbiol 66:325–47, 2012). Improvemen...

    Authors: Paola Martinez-Amador, Nori Castañeda, Antonio Loza, Lizeth Soto, Enrique Merino and Rosa Maria Gutierrez-Rios
    Citation: BMC Research Notes 2019 12:686
    Content type: Data note Published on:

  8. The purpose of this experiment is to analyze the changes of transcriptome in Pseudomonas aeruginosa under the action of sodium houttuyfonate (SH) to reveal the possible mechanism of SH inhibiting P. aeruginosa. W...

    Authors: Yeye Zhao, Yuanqing Si, Longfei Mei, Jiadi Wu, Jing Shao, Changzhong Wang and Daqiang Wu
    Citation: BMC Research Notes 2019 12:685
    Content type: Data note Published on:

  9. Persian walnut (Juglans regia L.), the walnut species cultivated for nut production, is grown worldwide in temperate areas. In this work, chronological phenotypic data have been collected regarding a part of the ...

    Authors: Anthony Bernard, Teresa Barreneche, Marine Delmas, Sophie Durand, Cyril Pommier, Fabrice Lheureux, Eloïse Tranchand, Marianne Naudin and Elisabeth Dirlewanger
    Citation: BMC Research Notes 2019 12:662
    Content type: Data note Published on:

  11. Basal stem rot disease causes severe economic losses to oil palm production in South-east Asia and little is known on the pathogenicity of the pathogen, the basidiomyceteous Ganoderma boninense. Our data presente...

    Authors: Mui Yun Wong, Nisha T. Govender and Chia Sui Ong
    Citation: BMC Research Notes 2019 12:631
    Content type: Data note Published on:

  12. Transcription of eukaryotic protein-coding genes by RNA polymerase II (pol II) is highly regulated at initiation, elongation and termination. Transcription is also coordinated with co-transcriptional processin...

    Authors: Michael Tellier, Jessica G. Hardy, Chris J. Norbury and Shona Murphy
    Citation: BMC Research Notes 2019 12:554
    Content type: Data note Published on:

    The Data note to this article has been published in BMC Research Notes 2018 11:894

  13. Crop production is an important variable in social, economic and environmental analyses. There is an abundance of crop data available for the United States, but we lack a typology of county-level crop producti...

    Authors: Courtney R. Hammond Wagner, Meredith T. Niles and Eric D. Roy
    Citation: BMC Research Notes 2019 12:552
    Content type: Data note Published on:

  15. Label-free quantitative proteomics has emerged as a powerful strategy to obtain high quality quantitative measures of the proteome with only a very small quantity of total protein extract. Because our research...

    Authors: Gaëlle Lelandais, Thomas Denecker, Camille Garcia, Nicolas Danila, Thibaut Léger and Jean-Michel Camadro
    Citation: BMC Research Notes 2019 12:470
    Content type: Data note Published on:

  16. Aspergillus flavus isolate TERIBR1 was isolated from tannery sludge highly contaminated with chromium. During characterization process, it exhibited capability to adapt and grow in fungal growth media amended wit...

    Authors: Pushplata Prasad Singh, Akanksha Jaiswar, Divya Srivastava and Alok Adholeya
    Citation: BMC Research Notes 2019 12:443
    Content type: Data note Published on:

  17. The data presented herein represents the raw genotype data of a recently conducted larger study which investigated the association of single nucleotide polymorphisms (SNPs) in breast cancer related genes with ...

    Authors: Nirmala Dushyanthi Sirisena, Nilakshi Samaranayake and Vajira H. W. Dissanayake
    Citation: BMC Research Notes 2019 12:435
    Content type: Data note Published on:

    The Data note to this article has been published in BMC Research Notes 2018 11:643

    The Research article to this article has been published in BMC Cancer 2018 18:180

  18. In humanitarian settings, children of pastoralists usually are the increased risk of malnutrition and its related complications. Consequently, as part of the program’s targeted response to the burgeoning malnu...

    Authors: Emmanuel Nene Odjidja and Sonia Hakizimana
    Citation: BMC Research Notes 2019 12:434
    Content type: Data note Published on:

  19. Black Bengal goat (Capra hircus), a member of the Bovidae family with the unique traits of high prolificacy, skin quality and low demand for food is the most socioeconomically significant goat breed in Bangladesh...

    Authors: Amam Zonaed Siddiki, Abdul Baten, Masum Billah, Mohammad Atique Ul Alam, Kazi Shefaul Mulk Shawrob, Sourav Saha, Muntaha Chowdhury, Atif Hasan Rahman, Michael Stear, Gous Miah, Mahadia Kumkum, Mohammad Sirazul Islam, Mohammad Alamgir Hossain, A. K. M. Moniruzzaman Mollah and Md. Kabirul Islam Khan
    Citation: BMC Research Notes 2019 12:362
    Content type: Data note Published on:

  20. Mycolicibacterium peregrinum, a rapidly growing mycobacterial species, can opportunistically infect humans and other animals. Although M. peregrinum infections in animals have been reported, the infection sources...

    Authors: Tetsuya Komatsu, Kenji Ohya, Kotaro Sawai, Justice Opare Odoi, Keiko Otsu, Atsushi Ota, Toshihiro Ito, Mikihiko Kawai and Fumito Maruyama
    Citation: BMC Research Notes 2019 12:341
    Content type: Data note Published on:

  22. Soybean aphid (Aphis glycines Matsumura; SBA) is the most economically damaging insect of soybean (Glycine max) in the United States. One previous study demonstrated that avirulent (biotype 1) and virulent (bioty...

    Authors: Surendra Neupane, Adam J. Varenhorst and Madhav P. Nepal
    Citation: BMC Research Notes 2019 12:325
    Content type: Data note Published on:

  23. The present database contains information on patient falls in the hospital setting. Data were collected in January 2018 with of describing in-hospital falls reported from 1st January 2012 to 31 December 2017 i...

    Authors: Aline Brenner de Souza, Vania Röhsig, Rubia Natasha Maestri, Mohamed Fayeq Parrini Mutlaq, Elisiane Lorenzini, Belisa Marin Alves, Daniela Oliveira and Danusa Cristina Gatto
    Citation: BMC Research Notes 2019 12:284
    Content type: Data note Published on:

  24. The objective of this experiment was to identify transcripts in baker’s yeast (Saccharomyces cerevisiae) that could have originated from previously non-coding genomic regions, or de novo. We generated this data t...

    Authors: William R. Blevins, Lucas B. Carey and M. Mar Albà
    Citation: BMC Research Notes 2019 12:250
    Content type: Data note Published on:

  26. Voltage-gated Ca2+ channels (VGCCs) are of central relevance in regulating Ca2+ influx into living cells. The low-voltage activated (LVA) Cav3 T-type Ca2+ channels are widely distributed throughout the brain incl...

    Authors: Andreas Lundt, Christina Henseler, Carola Wormuth, Julien Soos, Robin Seidel, Ralf Müller, Muhammad Imran Arshaad, Karl Broich, Jürgen Hescheler, Agapios Sachinidis, Dan Ehninger, Anna Papazoglou and Marco Weiergräber
    Citation: BMC Research Notes 2019 12:157
    Content type: Data note Published on:

  27. Enterococci are Gram-positive lactic acid bacteria and common inhabitants of the gastrointestinal tract of mammals, including humans. They are also widely distributed in diverse environments such as soil, wate...

    Authors: Fauzia Aziz, Muhammad Nasim Khan, Safia Ahmed and Simon Colin Andrews
    Citation: BMC Research Notes 2019 12:99
    Content type: Data note Published on:

  31. Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea...

    Authors: Avizit Das, Peter Ianakiev, Abdul Baten, Rifath Nehleen, Tasneem Ehsan, Oly Ahmed, Mohammad Riazul Islam, M. Niamul Naser, Mong Sano Marma and Haseena Khan
    Citation: BMC Research Notes 2018 11:921
    Content type: Data note Published on:

  32. Cardiovascular risk factor burden was recently reported to be high in the Caribbean country Suriname. However, historical data for comparison were lacking. We report here rediscovered and hitherto unpublished ...

    Authors: Lizzy M. Brewster and Jules Brewster
    Citation: BMC Research Notes 2018 11:919
    Content type: Data note Published on:

  33. The Chars Tobacco Assessment Project 2018 is a holistic survey conducted in the chars (riverine islands) of Gaibandha in Northern Bangladesh, covering 985 households over 24 clusters. The survey was conducted wit...

    Authors: Adnan M. S. Fakir, Mustahsin Aziz, Mutasim Billah Mubde, Afraim Karim, Ashraf S. Khan, Rifayat Raisa, Lubaba Ferdous Alim and Mayeesha Fahmin
    Citation: BMC Research Notes 2018 11:914
    Content type: Data note Published on:

  34. Plasmodium berghei ANKA infection in mice is a model for human cerebral malaria, the most severe complication of Plasmodium falciparum infection. Responses of brain microglia have been little investigated, and ma...

    Authors: Carlos Talavera-López, Barbara Capuccini, Richard Mitter, Jing-wen Lin and Jean Langhorne
    Citation: BMC Research Notes 2018 11:913
    Content type: Data note Published on:

    The Correction to this article has been published in BMC Research Notes 2019 12:48

  35. Leber’s hereditary optic neuropathy (LHON) is a mitochondrial genetic disease characterized by a variable and reduced penetrance. Individuals carrying a primary LHON-causing mitochondrial DNA (mtDNA) mutation ...

    Authors: Angelica Bianco, Alessio Valletti, Giovanna Longo, Luigi Bisceglia, Julio Montoya, Sonia Emperador, Silvana Guerriero and Vittoria Petruzzella
    Citation: BMC Research Notes 2018 11:911
    Content type: Data note Published on:

  36. This paper presents magnetic resonance images of the dorsi- and plantar flexor muscles for individual young and older healthy adults. Also included are measurements of the volume, proportion, and longitudinal ...

    Authors: Christopher J. Hasson, Jane A. Kent and Graham E. Caldwell
    Citation: BMC Research Notes 2018 11:910
    Content type: Data note Published on:

  38. Corals, the building blocks of reef ecosystems, have been severely threatened by climate change. Coral bleaching, the loss of the coral’s endosymbiotic algae, occurs as a consequence of increasing ocean temper...

    Authors: Maha J. Cziesielski, Yi Jin Liew and Manuel Aranda
    Citation: BMC Research Notes 2018 11:905
    Content type: Data note Published on:

  39. crAssphage is a newly found phage described as the most abundant virus in the human gut microbiome. The majority of the crAssphage proteins are unknown in sequences databases, and its pathogenicity and epidemi...

    Authors: Melany Cervantes-Echeverría, Edgar Equihua-Medina, Fernanda Cornejo-Granados, Abigail Hernández-Reyna, Filiberto Sánchez, Blanca Estela López-Contreras, Samuel Canizales-Quinteros and Adrián Ochoa-Leyva
    Citation: BMC Research Notes 2018 11:902
    Content type: Data note Published on:

  41. Transcription of eukaryotic protein-coding genes by RNA polymerase II (pol II) is a highly regulated process. Most human genes have multiple poly(A) sites, which define different possible mRNA ends, suggesting...

    Authors: Michael Tellier, Jessica G. Hardy, Chris J. Norbury and Shona Murphy
    Citation: BMC Research Notes 2018 11:894
    Content type: Data note Published on:

    The Data note to this article has been published in BMC Research Notes 2019 12:554

  42. Biomedical research is gaining ground on human disease through many types of “omics”, which is leading to increasingly effective treatments and broad applications for precision medicine. The majority of diseas...

    Authors: Jeremy J. Jay, Alexa Sanders, Robert W. Reid and Cory R. Brouwer
    Citation: BMC Research Notes 2018 11:883
    Content type: Data note Published on:

  43. The oomycete Pythium insidiosum infects humans and animals worldwide, and causes the life-threatening condition, called pythosis. Most patients lose infected organs or die from the disease. Comparative genomic an...

    Authors: Theerapong Krajaejun, Weerayuth Kittichotirat, Preecha Patumcharoenpol, Thidarat Rujirawat, Tassanee Lohnoo and Wanta Yingyong
    Citation: BMC Research Notes 2018 11:880
    Content type: Data note Published on:

  44. There is a dearth of research into the quality of assessments based on Multiple Choice Question (MCQ) items in Massive Open Online Courses (MOOCs). This dataset was generated to determine whether MCQ item writ...

    Authors: Eamon Costello, Jane C. Holland and Colette Kirwan
    Citation: BMC Research Notes 2018 11:849
    Content type: Data note Published on:

  46. Monilinia fructigena (phylum Ascomycota, family Sclerotiniaceae) is a plant pathogen that causes brown rot and blossom blight in pome fruit and stone fruit of the Rosaceae family, which can cause significant loss...

    Authors: Lucia Landi, Rita M. De Miccolis Angelini, Stefania Pollastro, Domenico Abate, Francesco Faretra and Gianfranco Romanazzi
    Citation: BMC Research Notes 2018 11:758
    Content type: Data note Published on:

  47. Mammalian genomics studies, especially those focusing on transcriptional regulation, require information on genomic locations of regulatory regions, particularly, transcription factor (TF) binding sites. There...

    Authors: Ilya E. Vorontsov, Alla D. Fedorova, Ivan S. Yevshin, Ruslan N. Sharipov, Fedor A. Kolpakov, Vsevolod J. Makeev and Ivan V. Kulakovskiy
    Citation: BMC Research Notes 2018 11:756
    Content type: Data note Published on:

  48. Staphylococcus species of the family Staphylococcaceae are facultatively anaerobic Gram-positive cocci growing in clusters, pairs and occasionally in short chains. Staphylococci can be detected in different envir...

    Authors: Elvira E. Ziganshina, Waleed S. Mohammed, Elena I. Shagimardanova, Leyla H. Shigapova and Ayrat M. Ziganshin
    Citation: BMC Research Notes 2018 11:694
    Content type: Data note Published on:

  49. Rabbit adipose mesenchymal stem cells were used for the purpose of studying acquisition of the chondrogenic phenotype over time at 1, 14 and 28 days after in vitro incubation with differentiation media, using ...

    Authors: Jeffrey R. Janus, Stephen G. Voss, Benjamin J. Madden, Mary Cristine Charlesworth, Michael S. Oldenburg, Dale Ekbom and Serban San-Marina
    Citation: BMC Research Notes 2018 11:666
    Content type: Data note Published on:

  50. The data presented herein represents the preliminary results of the functional assays of a recently conducted larger study in which two single nucleotide polymorphisms (SNPs) [XRCC2:rs3218550 and PHB:rs6917] were...

    Authors: Nirmala Dushyanthi Sirisena, Nilakshi Samaranayake and Vajira H. W. Dissanayake
    Citation: BMC Research Notes 2018 11:643
    Content type: Data note Published on:

    The Data note to this article has been published in BMC Research Notes 2019 12:435